PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 104940
Common NameNAM1-1, SELMODRAFT_104940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NAC
Protein Properties Length: 191aa    MW: 21840.8 Da    PI: 10.4798
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
104940genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.3e-54231631129
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel.. 99 
             lppGfrFhPtd+el+++yL kkv ++k+ + ++i+evd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd++v     +  +  
  104940  23 LPPGFRFHPTDNELITFYLVKKVVNTKFAA-HAIAEVDLNKFEPWDLPEKANMGEKEWYFFSLRDRKYPTGMRTNRATEAGYWKATGKDRDVRGGggS--Nvn 122
             79*************************999.88***************99999***************************************998540..345 PP

     NAM 100 ...........vglkktLvfykgrapkgektdWvmheyrle 129
                        vg+kktLvfy+grap+gekt+Wvmheyrle
  104940 123 nsnsngpgtslVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 163
             55666777777****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5719167IPR003441NAC domain
PROSITE profilePS5100554.09323190IPR003441NAC domain
PfamPF023653.1E-2824162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVVQQQQQQQ GSNRSRPPPN IWLPPGFRFH PTDNELITFY LVKKVVNTKF AAHAIAEVDL  60
NKFEPWDLPE KANMGEKEWY FFSLRDRKYP TGMRTNRATE AGYWKATGKD RDVRGGGGSN  120
VNNSNSNGPG TSLVGMKKTL VFYRGRAPRG EKTNWVMHEY RLEGKTAYLY GSRAAKVSNF  180
SRQYLMLCFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-5191623142NAC domain-containing protein 19
4dul_A2e-5191623142NAC domain-containing protein 19
1ut7_B2e-5191623142NO APICAL MERISTEM PROTEIN
1ut7_A2e-5191623142NO APICAL MERISTEM PROTEIN
1ut4_B2e-5191623142NO APICAL MERISTEM PROTEIN
1ut4_A2e-5191623142NO APICAL MERISTEM PROTEIN
3swp_D2e-51111628145NAC domain-containing protein 19
3swp_C2e-51111628145NAC domain-containing protein 19
3swp_B2e-51111628145NAC domain-containing protein 19
3swp_A2e-51111628145NAC domain-containing protein 19
3swm_D2e-51111628145NAC domain-containing protein 19
3swm_C2e-51111628145NAC domain-containing protein 19
3swm_B2e-51111628145NAC domain-containing protein 19
3swm_A2e-51111628145NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002976280.11e-142hypothetical protein SELMODRAFT_104940
SwissprotQ9FRV44e-74NAC54_ARATH; Protein CUP-SHAPED COTYLEDON 1
TrEMBLD8RZ331e-142D8RZ33_SELML; Putative uncharacterized protein NAM1-1
STRINGEFJ225401e-142(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.12e-74NAC family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]